{
  "_id": "6a2694d124555f66ed51cd46",
  "Package": "BaSTA",
  "Type": "Package",
  "Title": "Age-Specific Bayesian Survival Trajectory Analysis from\nIncomplete Census or Capture-Recapture/Recovery Data",
  "Version": "2.0.2",
  "Date": "2025-06-13",
  "Authors@R": "c(person(\"Fernando\", \"Colchero\", role = c(\"aut\", \"cre\"), \nemail = \"fernando_colchero@eva.mpg.de\"),\nperson(\"Owen\", \"Jones\", role = c(\"ctb\"),\nemail = \"jones@biology.sdu.dk\"))",
  "Description": "Estimates survival and mortality with covariates from\ncensus or capture-recapture/recovery data in a Bayesian\nframework when many individuals are of unknown age. It includes\ntools for data checking, model diagnostics and outputs such as\nlife-tables and plots, as described in Colchero, Jones, and\nRebke (2012) <doi:10.1111/j.2041-210X.2012.00186.x> and\nColchero et al. (2021) <doi:10.1038/s41467-021-23894-3>.",
  "License": "GPL (>= 3)",
  "LazyData": "yes",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-08 10:06:55 UTC",
    "User": "root"
  },
  "Author": "Fernando Colchero [aut, cre], Owen Jones [ctb]",
  "Maintainer": "Fernando Colchero <fernando_colchero@eva.mpg.de>",
  "Repository": "https://fercol.r-universe.dev",
  "Date/Publication": "2025-06-13 04:45:13 UTC",
  "RemoteUrl": "https://github.com/cran/BaSTA",
  "RemoteRef": "HEAD",
  "RemoteSha": "2214898f8b79ca0f638316c38a84735a6018231f",
  "MD5sum": "2bee20aec9928b1a9b2dd1170a2bc7f7",
  "_user": "fercol",
  "_type": "src",
  "_file": "BaSTA_2.0.2.tar.gz",
  "_fileid": "ceaf15a16d37770b23ed18aa84d6c023e4395d2a4e00dd754502558b8ae65807",
  "_filesize": 1915744,
  "_sha256": "ceaf15a16d37770b23ed18aa84d6c023e4395d2a4e00dd754502558b8ae65807",
  "_created": "2026-06-08T10:06:55.000Z",
  "_published": "2026-06-08T10:09:21.428Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 80069884249,
      "time": 98,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7477219655"
    },
    {
      "job": 80069884278,
      "time": 105,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7477222309"
    },
    {
      "job": 80069884258,
      "time": 72,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7477210863"
    },
    {
      "job": 80069884254,
      "time": 83,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7477214390"
    },
    {
      "job": 80069422641,
      "time": 153,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7477183738"
    },
    {
      "job": 80069884193,
      "time": 90,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7477217329"
    },
    {
      "job": 80069884259,
      "time": 79,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7477212564"
    },
    {
      "job": 80069884273,
      "time": 82,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7477213833"
    },
    {
      "job": 80069884266,
      "time": 70,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7477210027"
    }
  ],
  "_buildurl": "https://github.com/r-universe/fercol/actions/runs/27130315190",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/BaSTA",
  "_commit": {
    "id": "2214898f8b79ca0f638316c38a84735a6018231f",
    "author": "Fernando Colchero <fernando_colchero@eva.mpg.de>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 2.0.2\n",
    "time": 1749789913
  },
  "_maintainer": {
    "name": "Fernando Colchero",
    "email": "fernando_colchero@eva.mpg.de",
    "login": "fercol",
    "description": "I am a statistical and mathematical ecologist working on developing and applying methods for demography and population dynamics.",
    "uuid": 5549144
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "snowfall",
      "version": ">= 1.84-6-2",
      "role": "Imports"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-24",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "2.0.2",
      "date": "2025-06-13"
    }
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "fercol",
      "count": 8,
      "uuid": 5549144
    }
  ],
  "_userbio": {
    "uuid": 5549144,
    "type": "user",
    "name": "Fernando Colchero",
    "description": "I am a statistical and mathematical ecologist working on developing and applying methods for demography and population dynamics."
  },
  "_downloads": {
    "count": 329,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/BaSTA"
  },
  "_mentions": 10,
  "_searchresults": 28,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/BaSTA.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "manual.pdf"
  ],
  "_realowner": "fercol",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.0",
      "date": "2011-11-05"
    },
    {
      "version": "1.1",
      "date": "2012-02-21"
    },
    {
      "version": "1.2",
      "date": "2012-03-19"
    },
    {
      "version": "1.3",
      "date": "2012-07-13"
    },
    {
      "version": "1.4",
      "date": "2012-09-25"
    },
    {
      "version": "1.5",
      "date": "2012-10-21"
    },
    {
      "version": "1.6",
      "date": "2012-11-19"
    },
    {
      "version": "1.7",
      "date": "2012-12-28"
    },
    {
      "version": "1.8",
      "date": "2013-04-01"
    },
    {
      "version": "1.9",
      "date": "2013-08-10"
    },
    {
      "version": "1.9.1",
      "date": "2014-01-22"
    },
    {
      "version": "1.9.2",
      "date": "2014-01-24"
    },
    {
      "version": "1.9.3",
      "date": "2014-03-01"
    },
    {
      "version": "1.9.4",
      "date": "2015-11-08"
    },
    {
      "version": "1.9.5",
      "date": "2022-10-05"
    },
    {
      "version": "2.0.0",
      "date": "2024-07-08"
    },
    {
      "version": "2.0.1",
      "date": "2025-01-17"
    },
    {
      "version": "2.0.2",
      "date": "2025-06-13"
    }
  ],
  "_exports": [
    "basta",
    "basta.default",
    "CensusToCaptHist",
    "coef.multibasta",
    "DataCheck",
    "FixCMRdata",
    "multibasta",
    "print.basta",
    "print.bastaCheckCens",
    "print.bastaCheckCMR",
    "print.multibasta",
    "summary.basta",
    "summary.bastaCheckCens",
    "summary.bastaCheckCMR",
    "summary.multibasta"
  ],
  "_datasets": [
    {
      "name": "bastaCensDat",
      "title": "Example of census data for BaSTA analysis.",
      "object": "bastaCensDat",
      "class": [
        "data.frame"
      ],
      "fields": [
        "ID",
        "Birth.Date",
        "Min.Birth.Date",
        "Max.Birth.Date",
        "Entry.Date",
        "Depart.Date",
        "Depart.Type",
        "Sex"
      ],
      "rows": 500,
      "table": true,
      "tojson": true
    },
    {
      "name": "bastaCensOut",
      "title": "Output from a Bayesian Survival Trajectory Analysis (BaSTA) analysis on a simulated census dataset.",
      "object": "bastaCensOut",
      "class": [
        "basta"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "bastaCMRdat",
      "title": "Example of capture-mark-recapture data for BaSTA analysis.",
      "object": "bastaCMRdat",
      "class": [
        "data.frame"
      ],
      "fields": [
        "id",
        "birth",
        "death",
        "Y.51",
        "Y.52",
        "Y.53",
        "Y.54",
        "Y.55",
        "Y.56",
        "Y.57",
        "Y.58",
        "Y.59",
        "Y.60",
        "Y.61",
        "Y.62",
        "Y.63",
        "Y.64",
        "Y.65",
        "Y.66",
        "Y.67",
        "Y.68",
        "Y.69",
        "Y.70",
        "Sex",
        "Weight"
      ],
      "rows": 500,
      "table": true,
      "tojson": true
    },
    {
      "name": "bastaCMRout",
      "title": "Output from a Bayesian Survival Trajectory Analysis (BaSTA) analysis on a simulated capture-mark-recapture (CMR) dataset.",
      "object": "bastaCMRout",
      "class": [
        "basta"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "BaSTA-package",
      "title": "BaSTA: Parametric Bayesian estimation of age-specific survival for truncated and censored capture-recapture or census data.",
      "topics": [
        "BaSTA-package",
        "BaSTA"
      ]
    },
    {
      "page": "basta",
      "title": "Parametric Bayesian estimation of age-specific survival for left-truncated and right-censored capture-mark-recapture or census data.",
      "concept": [
        "Survival analysis",
        "Bayesian inference"
      ],
      "topics": [
        "basta",
        "basta.default"
      ]
    },
    {
      "page": "bastaCensDat",
      "title": "Example of census data for BaSTA analysis.",
      "topics": [
        "bastaCensDat"
      ]
    },
    {
      "page": "bastaCensOut",
      "title": "Output from a Bayesian Survival Trajectory Analysis (BaSTA) analysis on a simulated census dataset.",
      "topics": [
        "bastaCensOut"
      ]
    },
    {
      "page": "bastaCMRdat",
      "title": "Example of capture-mark-recapture data for BaSTA analysis.",
      "topics": [
        "bastaCMRdat"
      ]
    },
    {
      "page": "bastaCMRout",
      "title": "Output from a Bayesian Survival Trajectory Analysis (BaSTA) analysis on a simulated capture-mark-recapture (CMR) dataset.",
      "topics": [
        "bastaCMRout"
      ]
    },
    {
      "page": "CensusToCaptHist",
      "title": "Constructs a capture-history matrix from repeated individual observations to be used in Bayesian Survival Trajectory Analysis (BaSTA).",
      "topics": [
        "CensusToCaptHist"
      ]
    },
    {
      "page": "DataCheck",
      "title": "Error checking for BaSTA input data.",
      "topics": [
        "DataCheck"
      ]
    },
    {
      "page": "FixCMRdata",
      "title": "Fix issues on CMR input data for BaSTA.",
      "topics": [
        "FixCMRdata"
      ]
    },
    {
      "page": "multibasta",
      "title": "Function to run multiple BaSTA models on the same dataset.",
      "concept": [
        "Survival analysis",
        "Bayesian inference"
      ],
      "topics": [
        "multibasta"
      ]
    },
    {
      "page": "summary.basta",
      "title": "Summarizing and plotting Bayesian Survival Trajectory Analysis (BaSTA) model outputs.",
      "topics": [
        "plot.basta",
        "print.basta",
        "summary.basta"
      ]
    },
    {
      "page": "summary.bastaCheckCMR",
      "title": "Summary of outputs from the data checking function in BaSTA.",
      "topics": [
        "print.bastaCheckCens",
        "print.bastaCheckCMR",
        "summary.bastaCheckCens",
        "summary.bastaCheckCMR"
      ]
    },
    {
      "page": "summary.multibasta",
      "title": "Summarizing multiple Bayesian Survival Trajectory Analsys (BaSTA) model output.",
      "topics": [
        "coef.multibasta",
        "print.multibasta",
        "summary.multibasta"
      ]
    }
  ],
  "_rundeps": [
    "snow",
    "snowfall"
  ],
  "_score": 2.4471580313422194,
  "_indexed": true,
  "_nocasepkg": "basta",
  "_universes": [
    "fercol"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2.0.2",
      "date": "2026-06-08T10:08:33.000Z",
      "distro": "noble",
      "commit": "2214898f8b79ca0f638316c38a84735a6018231f",
      "fileid": "3a4a633b6f0304029b6191048a9225d5fd6d63ebe03c028c2e64dedb64e1bf9e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/fercol/actions/runs/27130315190"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "2.0.2",
      "date": "2026-06-08T10:08:43.000Z",
      "distro": "noble",
      "commit": "2214898f8b79ca0f638316c38a84735a6018231f",
      "fileid": "04f8250c501e63bedc5fdfeedf09fa85cccfd2ba361c4712949e7ac91141c5a0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/fercol/actions/runs/27130315190"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2.0.2",
      "date": "2026-06-08T10:08:17.000Z",
      "commit": "2214898f8b79ca0f638316c38a84735a6018231f",
      "fileid": "0fdeed1ac33d6c758e250e39163ef2308bdd50bfe8eea435f48ed71b16036964",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/fercol/actions/runs/27130315190"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "2.0.2",
      "date": "2026-06-08T10:08:23.000Z",
      "commit": "2214898f8b79ca0f638316c38a84735a6018231f",
      "fileid": "bf1025fae49662ef1a0e2980fdf14ade26b7150bfa25630e111e443fb1775131",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/fercol/actions/runs/27130315190"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "2.0.2",
      "date": "2026-06-08T10:08:43.000Z",
      "commit": "2214898f8b79ca0f638316c38a84735a6018231f",
      "fileid": "9bdfc35d558127c65bada5f3794cbfffc60eb2c1918d764c151cc4311a7bf2f9",
      "status": "success",
      "buildurl": "https://github.com/r-universe/fercol/actions/runs/27130315190"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "2.0.2",
      "date": "2026-06-08T10:08:05.000Z",
      "commit": "2214898f8b79ca0f638316c38a84735a6018231f",
      "fileid": "6eb5f7baaaaa17c17adf5b894e70849fa50c3da1f11f7348d357ec35495da348",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/fercol/actions/runs/27130315190"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "2.0.2",
      "date": "2026-06-08T10:08:20.000Z",
      "commit": "2214898f8b79ca0f638316c38a84735a6018231f",
      "fileid": "e8bbccd001a50bffec5add7fa6df2a2bf6619fa0804fae3eed2e70da57339086",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/fercol/actions/runs/27130315190"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "2.0.2",
      "date": "2026-06-08T10:08:04.000Z",
      "commit": "2214898f8b79ca0f638316c38a84735a6018231f",
      "fileid": "e952291a319c125e0c87b3da4d0856aa2c3ce019f087648f63a6f85234d02bbf",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/fercol/actions/runs/27130315190"
    }
  ]
}