Package: BaSTA 2.0.1

BaSTA: Age-Specific Bayesian Survival Trajectory Analysis from Incomplete Census or Capture-Recapture/Recovery Data

Estimates survival and mortality with covariates from census or capture-recapture/recovery data in a Bayesian framework when many individuals are of unknown age. It includes tools for data checking, model diagnostics and outputs such as life-tables and plots, as described in Colchero, Jones, and Rebke (2012) <doi:10.1111/j.2041-210X.2012.00186.x> and Colchero et al. (2021) <doi:10.1038/s41467-021-23894-3>.

Authors:Fernando Colchero [aut, cre], Owen Jones [ctb]

BaSTA_2.0.1.tar.gz
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BaSTA.pdf |BaSTA.html✨
BaSTA/json (API)

# Install 'BaSTA' in R:

install.packages('BaSTA', repos = c('https://fercol.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

bastaCMRdat - Example of capture-mark-recapture data for BaSTA analysis.
bastaCMRout - Output from a Bayesian Survival Trajectory Analysis (BaSTA) analysis on a simulated capture-mark-recapture (CMR) dataset.
bastaCensDat - Example of census data for BaSTA analysis.
bastaCensOut - Output from a Bayesian Survival Trajectory Analysis (BaSTA) analysis on a simulated census dataset.

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.45 score 14 scripts 738 downloads 10 mentions 15 exports 2 dependencies

Last updated 2 months agofrom:4261691d3b. Checks:8 OK. Indexed: yes.

Target	Result	Latest binary
Doc / Vignettes	OK	Feb 15 2025
R-4.5-win	OK	Feb 15 2025
R-4.5-mac	OK	Feb 15 2025
R-4.5-linux	OK	Feb 15 2025
R-4.4-win	OK	Feb 15 2025
R-4.4-mac	OK	Feb 15 2025
R-4.3-win	OK	Feb 15 2025
R-4.3-mac	OK	Feb 15 2025

Exports:basta basta.default CensusToCaptHist coef.multibasta DataCheck FixCMRdata multibasta print.basta print.bastaCheckCens print.bastaCheckCMR print.multibasta summary.basta summary.bastaCheckCens summary.bastaCheckCMR summary.multibasta

Dependencies:snow snowfall

Help page	Topics
BaSTA: Parametric Bayesian estimation of age-specific survival for truncated and censored capture-recapture or census data.	BaSTA-package BaSTA
Parametric Bayesian estimation of age-specific survival for left-truncated and right-censored capture-mark-recapture or census data.	basta basta.default
Example of census data for BaSTA analysis.	bastaCensDat
Output from a Bayesian Survival Trajectory Analysis (BaSTA) analysis on a simulated census dataset.	bastaCensOut
Example of capture-mark-recapture data for BaSTA analysis.	bastaCMRdat
Output from a Bayesian Survival Trajectory Analysis (BaSTA) analysis on a simulated capture-mark-recapture (CMR) dataset.	bastaCMRout
Constructs a capture-history matrix from repeated individual observations to be used in Bayesian Survival Trajectory Analysis (BaSTA).	CensusToCaptHist
Error checking for BaSTA input data.	DataCheck
Fix issues on CMR input data for BaSTA.	FixCMRdata
Function to run multiple BaSTA models on the same dataset.	multibasta
Summarizing and plotting Bayesian Survival Trajectory Analysis (BaSTA) model outputs.	plot.basta print.basta summary.basta
Summary of outputs from the data checking function in BaSTA.	print.bastaCheckCens print.bastaCheckCMR summary.bastaCheckCens summary.bastaCheckCMR
Summarizing multiple Bayesian Survival Trajectory Analsys (BaSTA) model output.	coef.multibasta print.multibasta summary.multibasta

Package: BaSTA 2.0.1

BaSTA: Age-Specific Bayesian Survival Trajectory Analysis from Incomplete Census or Capture-Recapture/Recovery Data

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Help Manual

Usage by other packages (reverse dependencies)