Package: BaSTA 2.0.3

BaSTA: Age-Specific Bayesian Survival Trajectory Analysis from Incomplete Census or Capture-Recapture/Recovery Data

Estimates survival and mortality with covariates and random effects from census or capture-recapture/recovery data in a Bayesian framework when many individuals are of unknown age. It includes tools for data checking, model diagnostics and outputs such as life-tables and plots, as described in Colchero, Jones, and Rebke (2012) <doi:10.1111/j.2041-210X.2012.00186.x> and Colchero et al. (2021) <doi:10.1038/s41467-021-23894-3>.

Authors:Fernando Colchero [aut, cre], Owen Jones [ctb]

BaSTA_2.0.3.tar.gz
BaSTA_2.0.3.zip(r-4.7-any)BaSTA_2.0.3.zip(r-4.6-any)BaSTA_2.0.3.zip(r-4.5-any)
BaSTA_2.0.3.tgz(r-4.6-any)BaSTA_2.0.3.tgz(r-4.5-any)
BaSTA_2.0.3.tar.gz(r-4.7-any)BaSTA_2.0.3.tar.gz(r-4.6-any)
BaSTA_2.0.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
BaSTA/json (API)

# Install 'BaSTA' in R:

install.packages('BaSTA', repos = c('https://fercol.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

bastaCensDat - Example of census data for BaSTA analysis.
bastaCensOut - Output from a Bayesian Survival Trajectory Analysis (BaSTA) analysis on a simulated census dataset.
bastaCMRdat - Example of capture-mark-recapture data for BaSTA analysis.
bastaCMRout - Output from a Bayesian Survival Trajectory Analysis (BaSTA) analysis on a simulated capture-mark-recapture (CMR) dataset.

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.49 score 31 scripts 440 downloads 10 mentions 16 exports 2 dependencies

Last updated from:ca2614f1f1. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel	OK	95
source / vignettes	OK	154
linux-release	OK	91
macos-release	OK	111
macos-oldrel	OK	97
windows-devel	OK	69
windows-release	OK	63
windows-oldrel	OK	63
wasm-release	OK	84

Exports:basta basta.default CensusToCaptHist coef.multibasta DataCheck FixCMRdata multibasta multibasta.default print.basta print.bastaCheckCens print.bastaCheckCMR print.multibasta summary.basta summary.bastaCheckCens summary.bastaCheckCMR summary.multibasta

Dependencies:snow snowfall

Help page	Topics
BaSTA: Parametric Bayesian estimation of age-specific survival for truncated and censored capture-recapture or census data.	BaSTA-package BaSTA
Parametric Bayesian estimation of age-specific survival for left-truncated and right-censored capture-mark-recapture or census data.	basta basta.default
Example of census data for BaSTA analysis.	bastaCensDat
Output from a Bayesian Survival Trajectory Analysis (BaSTA) analysis on a simulated census dataset.	bastaCensOut
Example of capture-mark-recapture data for BaSTA analysis.	bastaCMRdat
Output from a Bayesian Survival Trajectory Analysis (BaSTA) analysis on a simulated capture-mark-recapture (CMR) dataset.	bastaCMRout
Constructs a capture-history matrix from repeated individual observations to be used in Bayesian Survival Trajectory Analysis (BaSTA).	CensusToCaptHist
Error checking for BaSTA input data.	DataCheck
Fix issues on CMR input data for BaSTA.	FixCMRdata
Function to run multiple BaSTA models on the same dataset.	multibasta multibasta.default
Summarizing and plotting Bayesian Survival Trajectory Analysis (BaSTA) model outputs.	plot.basta print.basta summary.basta
Summary of outputs from the data checking function in BaSTA.	print.bastaCheckCens print.bastaCheckCMR summary.bastaCheckCens summary.bastaCheckCMR
Summarizing multiple Bayesian Survival Trajectory Analsys (BaSTA) model output.	coef.multibasta print.multibasta summary.multibasta

Package: BaSTA 2.0.3

BaSTA: Age-Specific Bayesian Survival Trajectory Analysis from Incomplete Census or Capture-Recapture/Recovery Data

Citation

Readme and manuals

Help Manual

Usage by other packages (reverse dependencies)